7UO1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7UO1_002 | 1/B/96:102 | No text annotation | ||
| HL_7UO1_005 | 1/B/188:198 | No text annotation | ||
| HL_7UO1_006 | 1/B/212:216 | No text annotation | ||
| HL_7UO1_007 | 1/B/274:280 | No text annotation | ||
| HL_7UO1_008 | 1/B/313:318 | No text annotation | geometric HL_8B0X_074 HL_37569.4 | |
| HL_7UO1_011 | 1/C/54:62 | T-loop with 2 stacked bulged bases | homologous HL_3TUP_003 HL_33597.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7UO1_001 | No text annotation | ||
| HL_7UO1_003 | No text annotation | ||
| HL_7UO1_004 | No text annotation | ||
| HL_7UO1_012 | No text annotation | ||
| HL_7UO1_009 | No text annotation | ||
| HL_7UO1_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7UO1_005 | 1/B/78:87, 1/B/242:243 | No text annotation | ||
| IL_7UO1_006 | 1/B/107:108, 1/B/117:119 | Single bulged A | geometric IL_8P9A_242 NA | |
| IL_7UO1_008 | 1/B/208:212, 1/B/216:221 | No text annotation | ||
| IL_7UO1_011 | 1/B/253:272, 1/B/282:296 | No text annotation | ||
| IL_7UO1_009 | 1/B/304:306, 1/B/325:326 | Single bulged A | geometric IL_9DFE_058 IL_14190.4 | |
| IL_7UO1_010 | 1/C/51:53, 1/C/63:65 | No text annotation | homologous IL_4WSM_373 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7UO1_001 | Isolated non-canonical cWW pair | ||
| IL_7UO1_002 | No text annotation | ||
| IL_7UO1_003 | No text annotation | ||
| IL_7UO1_004 | Major groove intercalation | ||
| IL_7UO1_007 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7UO1_001 | 1/B/10:20, 1/B/61:67, 1/B/359:364 | No text annotation | ||
| J4_7UO1_001 | 1/B/91:92, 1/B/106:108, 1/B/117:120, 1/B/237:238 | No text annotation | ||
| J4_7UO1_002 | 1/B/120:154, 1/B/164:184, 1/B/202:208, 1/B/221:237 | No text annotation | ||
| J4_7UO1_003 | 1/C/7:10, 1/C/26:28, 1/C/44:50, 1/C/66:67 | tRNA junction | homologous J4_5WT1_002 J4_40477.2 | |
| J5_7UO1_001 | 1/B/74:75, 1/B/246:250, 1/B/299:304, 1/B/326:342, 1/B/346:353 | No text annotation |
Problematic loops
No problematic loops
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